Ontology-aware DNA methylation classification with a curated atlas of human tissues and cell types
Mirae Kim, Ruth Dannenfelser, Yufei Cui, Genevera Allen, Vicky Yao bioRxiv 2025.04.18.649618; doi: https://doi.org/10.1101/2025.04.18.649618
CV
Education
- Ph.D in Version Control Theory, GitHub University, 2018 (expected)
- M.S. in Jekyll, GitHub University, 2014
- B.S. in GitHub, GitHub University, 2012
Work experience
- Spring 2024: Academic Pages Collaborator
- Github University
- Duties includes: Updates and improvements to template
- Supervisor: The Users
- Fall 2015: Research Assistant
- Github University
- Duties included: Merging pull requests
- Supervisor: Professor Hub
- Summer 2015: Research Assistant
- Github University
- Duties included: Tagging issues
- Supervisor: Professor Git
Skills
- Skill 1
- Skill 2
- Sub-skill 2.1
- Sub-skill 2.2
- Sub-skill 2.3
- Skill 3
Publications
Deep learning-based classification of breast cancer cells using transmembrane receptor dynamics
Mirae Kim, Soonwoo Hong, Thomas E Yankeelov, Hsin-Chih Yeh, Yen-Liang Liu, Deep learning-based classification of breast cancer cells using transmembrane receptor dynamics, Bioinformatics, Volume 38, Issue 1, January 2022, Pages 243–249, https://doi.org/10.1093/bioinformatics/btab581
Transmembrane Receptor Dynamics as Biophysical Markers for Assessing Cancer Cells
Kim, M., Liu, YL. (2022). Transmembrane Receptor Dynamics as Biophysical Markers for Assessing Cancer Cells. In: Santra, T.S., Tseng, FG. (eds) Handbook of Single-Cell Technologies. Springer, Singapore. https://doi.org/10.1007/978-981-10-8953-4_38
Three-dimensional two-color dual-particle tracking microscope for monitoring DNA conformational changes and nanoparticle landings on live cells
Liu, Y.-L., Perillo, E. P., Ang, P., Kim, M., Nguyen, D. T., Blocher, K., Chen, Y.-A., Liu, C., Hassan, A. M., Vu, H. T., Chen, Y.-I., Dunn, A. K., & Yeh, H.-C. (2020). Three-Dimensional Two-Color Dual-Particle Tracking Microscope for Monitoring DNA Conformational Changes and Nanoparticle Landings on Live Cells. ACS Nano 14(7) 7927–7939. https://doi.org/10.1021/acsnano.9b08045
Spatial EGFR dynamics and metastatic phenotypes modulated by upregulated EphB2 and Src pathways in advanced prostate cancer
Liu Y-L, Horning AM, Lieberman B, Kim M, Lin C-K, Hung C-N, Chou C-W, Wang C-M, Lin C-L, Kirma NB, et al. Spatial EGFR Dynamics and Metastatic Phenotypes Modulated by Upregulated EphB2 and Src Pathways in Advanced Prostate Cancer. Cancers. 2019; 11(12):1910. https://doi.org/10.3390/cancers11121910
Assessing metastatic potential of breast cancer cells based on EGFR dynamics
Liu, YL., Chou, CK., Kim, M. et al. Assessing metastatic potential of breast cancer cells based on EGFR dynamics. Sci Rep 9, 3395 (2019). https://doi.org/10.1038/s41598-018-37625-0
Talks
Conference Proceeding talk 3 on Relevant Topic in Your Field
Conference proceedings talk at Testing Institute of America 2014 Annual Conference, Los Angeles, CA
Talk 2 on Relevant Topic in Your Field
Talk at London School of Testing, London, UK
Tutorial 1 on Relevant Topic in Your Field
Tutorial at UC-Berkeley Institute for Testing Science, Berkeley CA, USA
Talk 1 on Relevant Topic in Your Field
Talk at UC San Francisco, Department of Testing, San Francisco, California
Teaching
Service and leadership
- Currently signed in to 43 different slack teams